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Abstract The impacts of El Niño‐Southern Oscillation (ENSO) on salinity and alkalinity in an equatorial coral reef lagoon (Kanton) are investigated using water samples collected in three non‐El Niño years (1973, 2012, and 2018) and one El Niño year (2015). A one‐dimensional, advective‐diffusive model is developed to aid in the interpretation of the sparse observations and make estimates of net ecosystem calcification (NEC) rates. The Kanton lagoon experiences extreme salinity and alkalinity variations driven by ENSO variations in precipitation. During the non‐El Niño years, salinity increases from the ocean (35.5 psu) to the back of the lagoon (38 psu) because evaporation exceeds precipitation, and water resides in the back of the lagoon for ∼180 days. Early in the 2015–2016 El Niño, the back of the lagoon is only ∼1 psu saltier than the ocean because precipitation had begun to exceed evaporation. The model suggests that during El Niño events, when precipitation substantially exceeds evaporation, the back of the lagoon is less salty than the ocean (30–32 psu). Alkalinity variations in the lagoon are primarily due to dilution or concentration driven by the ENSO variations in precipitation and NEC that causes an alkalinity deficit of ∼250 μmol/kg in the back of the lagoon. The estimated NEC rate in 2015 is ∼25% lower (4.1 mmol/day) than in the non‐El Niño years (5.3–5. 7 mmol/day). The NEC rates and coral cover measurements indicate that the Kanton lagoon has recovered from the complete loss of coral cover during the 2002–2003 El Niño. 

Abstract Measurements by the submersible ultraviolet nitrate analyzer (SUNA) can be used to derive high‐resolution in situ nitrate concentration with reliable accuracy and precision. Here we report our operational practices for SUNA deployment (including pre‐cruise instrument preparation and in‐cruise instrument maintenance) and detailed post‐cruise nitrate quality control procedures for SUNA integrated onto the CTD rosette. This work is based on experiences and findings from over 500 individual SUNA casts collected from 24 cruises (of which 14 cruises have been quality controlled so far) over the past 5 yr. After applying previously published spectral corrections for temperature, salinity, and pressure effects, we found residual biases in SUNA nitrate estimates compared to independently measured discrete samples. We further develop and assess a new two‐step procedure to remove remaining biases: (1) a general temperature‐dependent adjustment at low‐nitrate concentrations; and (2) a cruise‐specific full‐range bias correction. Our final quality‐controlled SUNA nitrate data achieve an accuracy of 0.34–0.78 μM, with a precision of 0.08–0.21 μM, at a vertical resolution of 1 m. Additional comparisons between the nitrate and density data confirm the high quality of the quality‐controlled SUNA data. Although applying spectral correction algorithms increases the accuracy and precision of the instrument‐output nitrate concentration, we emphasize that additional constraints of SUNA measurements against other independent sources (e.g., bottle data, temperature, and density) are irreplaceable to ensure the accuracy of final nitrate data. 

Abstract This study examines the link between near-bottom outflows of dense water formed in Antarctic coastal polynyas and onshore intrusions of Circumpolar Deep Water (CDW) through prograde troughs cutting across the continental shelf. Numerical simulations show that the dense water outflow is primarily in the form of cyclonic eddies. The trough serves as a topographic guide that organizes the offshore-moving dense water eddies into a chain pattern. The offshore migration speed of the dense water eddies is similar to the velocity of the dense water offshore flow in the trough, which scaling analysis finds to be proportional to the reduced gravity of the dense water and the slope of the trough sidewalls and to be inversely proportional to the Coriolis parameter. Our model simulations indicate that, as these cyclonic dense water eddies move across the trough mouth into the deep ocean, they entrain CDW from offshore and carry CDW clockwise along their periphery into the trough. Subsequent cyclonic dense water eddies then entrain the intruding CDW further toward the coast along the trough. This process of recurring onshore entrainment of CDW by a topographically constrained chain of offshore-flowing dense water eddies is consistent with topographic hotspots of onshore intrusion of CDW around Antarctica identified by other studies. It can bring CDW from offshore to close to the coast and thus impact the heat flux into Antarctic coastal regions, affecting interactions among ocean, sea ice, and ice shelves. Significance StatementTroughs cutting across the Antarctic continental shelf are a major conduit for the transport of dense shelf water from coastal formation regions to the shelf break. This study describes a process in which clockwise-spinning eddies moving offshore in prograde troughs successively entrain filaments of relatively warm Circumpolar Deep Water from offshore across the entire shelf and into the coastal region. This eddy-induced transport provides a new understanding of the shelf edge exchange process identified in previous studies and a mechanism for further onshore intrusion of the warm Circumpolar Deep Water over parts of the Antarctic shelf. The resultant onshore heat flux could potentially bring a substantial amount of heat from offshore into the coastal region and thus affect ice–ocean interactions through melting sea ice and ice shelves. 

Abstract Despite the ubiquity of eddies at the Mid‐Atlantic Bight shelf‐break front, direct observations of frontal eddies at the shelf‐break front are historically sparse and their biological impact is mostly unknown. This study combines high resolution physical and biological snapshots of two frontal eddies with an idealized 3‐D regional model to investigate eddy formation, kinematics, upwelling patterns, and biological impacts. During May 2019, two eddies were observed in situ at the shelf‐break front. Each eddy showed evidence of nutrient and chlorophyll enhancement despite rotating in opposite directions and having different physical characteristics. Our results suggest that cyclonic eddies form as shelf waters are advected offshore and slope waters are advected shoreward, forming two filaments that spiral inward until sufficient water is entrained. Rising isohalines and upwelled slope water dye tracer within the model suggest that upwelling coincided with eddy formation and persisted for the duration of the eddy. In contrast, anticyclonic eddies form within troughs of the meandering shelf‐break front, with amplified frontal meanders creating recirculating flow. Upwelling of subsurface shelf water occurs in the form of detached cold pool waters during the formation of the anticyclonic eddies. The stability properties of each eddy type were estimated via the Burger number and suggest different ratios of baroclinic versus barotropic contributions to frontal eddy formation. Our observations and model results indicate that both eddy types may persist for more than a month and upwelling in both eddy types may have significant impacts on biological productivity of the shelf break. 

Abstract In aquatic ecosystems, allochthonous nutrient transport to the euphotic zone is an important process that fuels new production. Here, we use high‐resolution physical and biogeochemical observations from five summers to estimate the mean vertical nitrate flux, and thus new production over the Northeast U.S. Shelf (NES). We find that the summertime nitrate field is primarily controlled by biological uptake and physical advection–diffusion processes, above and below the 1% light level depth, respectively. We estimate the vertical nitrate flux to be 8.2 ± 5.3 × 10⁻⁶ mmol N m⁻² s⁻¹for the mid‐shelf and 12.6 ± 8.6 × 10⁻⁶ mmol N m⁻² s⁻¹for the outer shelf. Furthermore, we show that the new production to total primary production ratio (i.e., the f‐ratio), consistently ranges between 10% and 15% under summer conditions on the NES. Two independent approaches—nitrate flux‐based new production and O₂/Ar‐based net community production—corroborate the robustness of the f‐ratio estimation. Since ~ 85% of the total primary production is fueled by recycled nutrients over sufficiently broad spatial and temporal scales, less than 15% of the organic matter produced in summer is available for export from the NES euphotic zone. Our direct quantification of new production not only provides more precise details about key processes for NES food webs and ecosystem function, but also demonstrates the potential of this approach to be applied to other similar datasets to understand nutrient and carbon cycling in the global ocean.